I presume y'all are using 360 heads with the stock valve sizes? From what the old DC Race Manual mentioned, before 360s came out, but 340s had the 2.02 intakes, you could use the 340 heads IF you clearanced the top of the cylinder bores to clear the bigger intake valves of the 340.
Bigger ports don't always work better on smaller displacement motors, unless they are really undersized to start with. Port velocity suffers with the larger ports, especially at lower rpm levels, typically.
The QJets on many mid-80s GM engines would not flow buy 650cfm, as the secondary air valve was mechanically restricted from opening all of the way at WOT. Earlier ones were good for 750cfm. Even on the TQuads, having the secondary air valve spring adjusted correctly was important.
LA Magnum heads are the best for performance. Intake ports are a little better, but the exhaust side is a good bit better than the earlier LA heads, as I recall.
The M-cars had issues with their exhaust system configuration. It was good until it got to the single muffler and single tail pipe, I suspect.
It's just really easy to over-carb, over-cam, and over-port a smaller cid engine, no matter what.
CBODY67